Genomics in Endangered Species Conservation: A Bibliometric Analysis
DOI:
https://doi.org/10.58812/wsnt.v4i02.2950Keywords:
Genomics, Endangered Species, Conservation Genomics, Bibliometric Analysis, VOSviewer, ScopusAbstract
This study presents a bibliometric analysis of research on genomics in endangered species conservation to map its intellectual structure, thematic evolution, and global collaboration patterns. Data were analyzed using bibliometric visualization techniques to identify keyword co-occurrence, thematic clusters, density distributions, co-authorship networks, institutional affiliations, and country-level collaborations. The results show that genomics and endangered species constitute the central knowledge base of the field, strongly connected with genetics, population genetics, and conservation genomics. Thematic evolution indicates a shift from traditional molecular genetics and phylogenetic studies toward high-throughput genomic approaches, particularly population genomics and single nucleotide polymorphism (SNP)-based analyses. Collaboration network analysis reveals a globally distributed but centralized structure, dominated by major research hubs such as the United States and China, with strong supporting contributions from Europe and emerging participation from developing regions.
References
[1] D. Daniel Hinsinger and J. Sergej Strijk, “Complete chloroplast genome sequence of Castanopsis concinna (Fagaceae), a threatened species from Hong Kong and South-Eastern China,” Mitochondrial DNA Part A DNA Mapping, Seq. Anal., vol. 28, no. 1, pp. 65–66, 2017, doi: 10.3109/19401736.2015.1110800.
[2] S. Zhu et al., “The jacktree genome and population genomics provides insights for the mechanisms of the germination obstacle and the conservation of endangered ornamental plants,” Hortic. Res., vol. 11, no. 8, 2024, doi: 10.1093/hr/uhae166.
[3] S. J. Amish et al., “Assessing thermal adaptation using family-based association and FST outlier tests in a threatened trout species,” Mol. Ecol., vol. 28, no. 10, pp. 2573–2593, 2019, doi: 10.1111/mec.15100.
[4] A. Harish, F. A. Lopes Pinto, S. Eriksson, and A. M. Johansson, “Genetic diversity and recent ancestry based on whole-genome sequencing of endangered Swedish cattle breeds,” BMC Genomics, vol. 25, no. 1, 2024, doi: 10.1186/s12864-024-09959-9.
[5] T. A. Wani, Z. A. Kaloo, and N. A. Dangroo, “Aconitum heterophyllum Wall. ex Royle: A critically endangered medicinal herb with rich potential for use in medicine,” J. Integr. Med., vol. 20, no. 2, pp. 104–113, 2022, doi: 10.1016/j.joim.2021.12.004.
[6] A. Geraldes et al., “Population genomic analyses reveal a highly differentiated and endangered genetic cluster of northern goshawks (Accipiter gentilis laingi) in Haida Gwaii,” Evol. Appl., vol. 12, no. 4, pp. 757–772, 2019, doi: 10.1111/eva.12754.
[7] C. J. Dyson, A. Pfennig, D. Ariano-Sánchez, J. Lachance, J. R. Mendelson, and M. A. D. Goodisman, “Genome of the endangered Guatemalan Beaded Lizard, Heloderma charlesbogerti, reveals evolutionary relationships of squamates and declines in effective population sizes,” G3 Genes, Genomes, Genet., vol. 12, no. 12, 2022, doi: 10.1093/g3journal/jkac276.
[8] H. A. Jackson et al., “Genomic erosion in a demographically recovered bird species during conservation rescue,” Conserv. Biol., vol. 36, no. 4, 2022, doi: 10.1111/cobi.13918.
[9] C. W. Ahrens, M. A. Supple, N. C. Aitken, D. J. Cantrill, J. O. Borevitz, and E. A. James, “Genomic diversity guides conservation strategies among rare terrestrial orchid species when taxonomy remains uncertain,” Ann. Bot., vol. 119, no. 8, pp. 1267–1277, 2017, doi: 10.1093/aob/mcx022.
[10] D. Liu, L. Zhang, J. Wang, and Y. Ma, “Conservation Genomics of a Threatened Rhododendron: Contrasting Patterns of Population Structure Revealed From Neutral and Selected SNPs,” Front. Genet., vol. 11, 2020, doi: 10.3389/fgene.2020.00757.
[11] C. Zhou et al., “The draft genome of the endangered Sichuan partridge (Arborophila rufipectus) with evolutionary implications,” Genes (Basel)., vol. 10, no. 9, 2019, doi: 10.3390/genes10090677.
[12] T. K. Oleksyk et al., “A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education,” Gigascience, vol. 1, no. 1, 2012, doi: 10.1186/2047-217X-1-14.
[13] C. H. Martin, J. E. Crawford, B. J. Turner, and L. H. Simons, “Diabolical survival in death valley: Recent pupfish colonization, gene flow and genetic assimilation in the smallest species range on earth,” Proc. R. Soc. B Biol. Sci., vol. 283, no. 1823, 2016, doi: 10.1098/rspb.2015.2334.
[14] Y. Ren et al., “Genomic insights into the evolution of the critically endangered soft-shelled turtle Rafetus swinhoei,” Mol. Ecol. Resour., vol. 22, no. 5, pp. 1972–1985, 2022, doi: 10.1111/1755-0998.13596.
[15] P. Perelman et al., “A molecular phylogeny of living primates,” PLoS Genet., vol. 7, no. 3, 2011, doi: 10.1371/journal.pgen.1001342.
[16] W. C. Funk, J. K. McKay, P. A. Hohenlohe, and F. W. Allendorf, “Harnessing genomics for delineating conservation units,” Trends Ecol. Evol., vol. 27, no. 9, pp. 489–496, 2012, doi: 10.1016/j.tree.2012.05.012.
[17] H. A. Lewin et al., “Earth BioGenome Project: Sequencing life for the future of life,” Proc. Natl. Acad. Sci. U. S. A., vol. 115, no. 17, pp. 4325–4333, 2018, doi: 10.1073/pnas.1720115115.
[18] A. R. Whiteley, S. W. Fitzpatrick, W. C. Funk, and D. A. Tallmon, “Genetic rescue to the rescue,” Trends Ecol. Evol., vol. 30, no. 1, pp. 42–49, 2015, doi: 10.1016/j.tree.2014.10.009.
[19] J. R. Ellis and J. M. Burke, “EST-SSRs as a resource for population genetic analyses,” Heredity, vol. 99, no. 2. Department of Biological Sciences, Vanderbilt University, Nashville, TN, United States, pp. 125–132, 2007. doi: 10.1038/sj.hdy.6801001.
[20] R. Frankham, “Challenges and opportunities of genetic approaches to biological conservation,” Biol. Conserv., vol. 143, no. 9, pp. 1919–1927, 2010, doi: 10.1016/j.biocon.2010.05.011.
[21] Y. Xue et al., “Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding,” Science (80-. )., vol. 348, no. 6231, pp. 242–245, 2015, doi: 10.1126/science.aaa3952.
[22] W. J. Kress, “Plant DNA barcodes: Applications today and in the future,” J. Syst. Evol., vol. 55, no. 4, pp. 291–307, 2017, doi: 10.1111/jse.12254.
[23] N. J. Ouborg, P. Vergeer, and C. Mix, “The rough edges of the conservation genetics paradigm for plants,” J. Ecol., vol. 94, no. 6, pp. 1233–1248, 2006, doi: 10.1111/j.1365-2745.2006.01167.x.
[24] P.-A. Gagnaire et al., “Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era,” Evol. Appl., vol. 8, no. 8, pp. 769–786, 2015, doi: 10.1111/eva.12288.
Downloads
Published
Issue
Section
License
Copyright (c) 2026 Loso Judijanto

This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.












