Molecular Detection of Marine-Borne Pathogen Vibrio cholerae in Traditional Fermented Shrimp Paste from East Lombok using Polymerase Chain Reaction
DOI:
https://doi.org/10.58812/wsnt.v4i02.2923Keywords:
Food Safety, Lombok, Polymerase Chain Reaction, Shrimp Paste, Vibrio CholeraeAbstract
Terasi is a traditional Indonesian fermented shrimp paste produced by local MSMEs, often under handmade conditions that raise concerns regarding the presence of marine-borne pathogens. This study aimed to perform molecular surveillance of Vibrio cholerae in matured solid block terasi from three prominent MSMEs in East Lombok using Polymerase Chain Reaction (PCR). Six samples from different production batches were evaluated. The methodology integrated physicochemical analysis ( and pH), and PCR detection targeting the F0316_RS13020 gene. Results showed that all samples possessed a low ranging from 0.63 to 0.66 and alkaline pH levels between 7.72 and 8.07. Molecular detection yielded negative results for V. cholerae across all samples, while the positive control was successfully amplified at the 637 bp target size. The absence of this pathogen is attributed to the synergistic hurdle technology of high salinity, low , and high-temperature roasting (up to 260°C), which inhibits Vibrio survival. This study confirms that matured terasi from East Lombok meets the microbiological safety criteria. Future monitoring should focus on raw materials using viability-based PCR to further enhance regional food safety surveillance, especially from fish and fishery products.
References
V. T. Herlina and R. H. B. Setiarto, “Terasi, exploring the Indonesian ethnic fermented shrimp paste,” J. Ethn. Foods, vol. 11, no. 7, 2024, doi: 10.1186/s42779-024-00222-w.
[2] R. Surya, D. Nugroho, N. Kamal, and K. Petsong, “Characteristics of Indonesian traditional fermented seafood paste (terasi) made from shrimp and anchovy,” J. Ethn. Foods, vol. 11, no. 2, 2024, doi: 10.1186/s42779-023-00218-y.
[3] B. R. Handayani et al., Terasi Nusa Tenggara Barat: Manfaat, Pengolahan, dan Mutu. Malang: Selaksa Media, 2023.
[4] BSN, Standar Nasional Indonesia 2716:2016, Terasi udang. Jakarta: Badan Standardisasi Nasional, 2016.
[5] S. Koswara et al., Produksi Pangan Untuk Industri Rumah Tangga: Terasi Udang. Jakarta: Badan Pengawas Obat dan Makanan Republik Indonesia, 2017.
[6] The Government of the Republic of Indonesia, Regulation of the Government of the Republic of Indonesia, no. 86. 2019.
[7] C. E. Hedges, “Presence of Potentially Pathogenic Vibrio spp. in Seafood Available for Sale in Melbourne, Australia,” RMIT University, 2025. doi: https://doi.org/10.25439/rmt.30452267.
[8] M. Afreen and I. Ucak, “Food-borne Pathogens in Seafood,” Eurasian J. Agric. Res., vol. 5, no. 1, pp. 44–58, 2021, [Online]. Available: https://izlik.org/JA23BM72LJ
[9] S. Gopal, S. K. Otta, S. Kumar, I. Karunasagar, M. Nishibuchi, and I. Karunasagar, “The occurrence of Vibrio species in tropical shrimp culture environments; implications for food safety,” Int. J. Food Microbiol., vol. 102, no. 2, pp. 151–159, 2005, doi: 10.1016/j.ijfoodmicro.2004.12.011.
[10] M. Bonnin-jusserand et al., “Vibrio species involved in seafood-borne outbreaks (Vibrio cholerae, V. parahaemolyticus and V. vulnificus): review of microbiological versus recent molecular detection methods in seafood products,” Crit. Rev. Food Sci. Nutr., vol. 59, no. 4, pp. 597–610, 2017, doi: 10.1080/10408398.2017.1384715.
[11] K. Koutsoumanis et al., “Public health aspects of Vibrio spp. related to the consumption of seafood in the EU,” EFSA J., vol. 22, no. 7, p. e8896, 2024, doi: 10.2903/j.efsa.2024.8896.
[12] D. Lesen, E. Nillian, D. N. A. Baki, and T. Robin, “Prevalence of Vibrio parahaemolyticus, Vibrio cholerae, and Vibrio alginolyticus in a White-leg Shrimp (Litopenaeus vannamei) Farm in Sarawak,” Pertanika J. Sci. Technol., vol. 32, no. 5, pp. 2233–2257, 2024, doi: https://doi.org/10.47836/pjst.32.5.17.
[13] M. Ghari, H. Alizadeh, and A. Karmostaji, “Prevalence and Genetic Characterization of Foodborne Vibrio spp. Isolated from Persian Gulf Seafood,” Infect. Epidemiol. Microbiol., vol. 11, no. 3, pp. 205–212, 2025, doi: 10.52547/iem.11.3.205.
[14] O. Di Maro et al., “Detection of pathogenic Vibrio spp. in foods: polymerase chain reaction-based screening strategy to rapidly detect pathogenic Vibrio parahaemolyticus, Vibrio cholerae, and Vibrio vulnificus in bivalve mollusks and preliminary results,” Ital. J. Food Saf., vol. 13, no. 1, p. 11635, 2024, doi: 10.4081/ijfs.2024.11635.
[15] R. K. Guntina and S. A. F. Kusuma, “Deteksi Bakteri Vibrio Cholerae,” Farmaka, vol. 15, no. 1, pp. 92–104, 2017, doi: https://doi.org/10.24198/jf.v15i1.12913.
[16] Y. M. R. Sinaga, R. Dewanti-Hariyadi, F. F. Perdhana, and T. I. Rahayu, “VBNC (viable but nonculturable) State of Gram Negative Foodborne Pathogenic Bacteria: A Review,” Food Agro-Industry J., vol. 4, no. 1, pp. 57–75, 2023, doi: https://doi.org/10.36761/fagi.v4i1.2857.
[17] H. Wong and C. Lin, “Evaluation of Typing of Vibrio parahaemolyticus by Three PCR Methods Using Specific Primers,” J. Clin. Microbiol., vol. 39, no. 12, pp. 4233–4240, 2001, doi: 10.1128/JCM.39.12.4233.
[18] F. F. Perdhana et al., “Detection of Pathogenic Bacteria in Shrimp Paste through an Enrichment Stage Using Nutrient Broth Medium,” in Proceedings of the 7th International Conference on Food, Agriculture, and Natural Resources, Atlantis Press International BV, 2022, pp. 388–394. doi: 10.2991/978-94-6463-274-3.
[19] E. Di Salvo et al., “Rapid Detection and Fast Induction of Viable but Nonculturable Vibrio parahaemolyticus and Vibrio cholerae,” J. Food Prot., vol. 88, no. 11, p. 100623, 2025, doi: 10.1016/j.jfp.2025.100623.
[20] J. C. Caigoy, T. Shimamoto, and T. Shimamoto, “Development of a simple allele-specific PCR for the detection of pathogenic Vibrio cholerae O1 and O139 in seafood,” J. Agric. Food Res., vol. 18, p. 101458, 2024, doi: 10.1016/j.jafr.2024.101458.
[21] F. F. Perdhana et al., “Rapid Detection of HDC Gene in Enterobacter aerogenes from Fish Products Using in Silico PCR for Food Safety and Allergy Risk Assessment Deteksi Cepat Gen HDC pada Enterobacter aerogenes dari Produk Perikanan Menggunakan in Silico PCR untuk Penilaian Keam,” J. Kolaboratif Sains, vol. 8, no. 3, pp. 1459–1474, 2025, doi: 10.56338/jks.v8i3.7038.
[22] G. Muthusamy et al., “Identification of Potential Biomarkers and Spectral Fingerprinting for Detection of Foodborne Pathogens in Raw Chicken Meat Matrix Using GCMS and FTIR,” Foods, vol. 13, p. 3416, 2024, doi: https://doi.org/10.3390/foods13213416.
[23] R. Prabhakaran, M. Sundari, and R. Muthu, “Molecular detection of foodborne pathogens with emphasis on multiplex-allele-specific PCR, computational primer design, and gene amplification approaches,” J. Microbiol. Methods, vol. 245, p. 107486, 2026, doi: 10.1016/j.mimet.2026.107486.
[24] J. Vidic et al., “Point-of-Need DNA Testing for Detection of Foodborne Pathogenic Bacteria,” Sensors, vol. 19, p. 1100, 2019, doi: 10.3390/s19051100.
[25] S. N. Ethica et al., “Detection of rtxA Gene as a Biomarker of Seafood-Borne Pathogen Vibrio cholerae using In Silico PCR Assay,” Squalen Bull. Mar. Fish. Postharvest Biotechnol., vol. 15, no. 2, pp. 91–98, 2020, doi: http://dx.doi.org/10.15578/squalen.v15i2.417.
[26] A. K. Anal et al., “Food safety risks in traditional fermented food from South-East Asia,” Food Control, vol. 109, p. 106922, 2019, doi: 10.1016/j.foodcont.2019.106922.
[27] T. Mahidsanan, P. Srinamngoen, and P. Sittisart, “Unraveling microbial diversity and physicochemical hazard level in Thai traditional fermented shrimp paste (Kapi),” PeerJ, vol. 14, p. e20864, 2026, doi: https://doi.org/10.7717/peerj.20864.
[28] M. D. Ariyana, L. Unsunnidhal, F. F. Perdhana, M. ‘Aidil Febriandito, B. R. Andayani, and L. D. Zuhdia, “Detection of Salmonella typhi Based on PCR Method on Solid Block Dried Shrimp Paste Produced by SMEs in East Lombok Regency,” Pro Food (Jurnal Ilmu dan Teknol. Pangan), vol. 11, no. 2, pp. 203–213, 2025, doi: https://doi.org/10.29303/profood.v11i2.508.
[29] N. Rohman and M. B. Alim, “Isolation, Identification, and Evaluation of Antimicrobial of the LAB from Bekasam: The Traditional Fermented Fish in Indonesia,” Biol. Med. Nat. Prod. Chem., vol. 14, no. 2, pp. 897–903, 2025, doi: 10.14421/biomedich.2025.142.897-903.
[30] A. Gaffar, Y. D. Jatmiko, and A. A. Prihanto, “Original article Multiplex PCR for the detection of Salmonella spp. in Indonesian traditional shrimp paste (Terasi),” Berk. Penelit. Hayati, vol. 27, no. 2, pp. 98–104, 2022, doi: https://doi.org/10.23869/bphjbr.27.2.20227.
[31] S. Preeprem, T. Aksonkird, T. Nuidate, W. Hajimasalaeh, Z. Hajiwangoh, and P. Mittraparp-arthorn, “Characterization and Genetic Relationships of Vibrio spp. Isolated from Seafood in Retail Markets, Yala, Thailand,” Trends Sci., vol. 20, no. 10, p. 5962, 2023, doi: https://doi.org/10.48048/tis.2023.5962.
[32] M. Ismail, S. Ahmad, K. Saeed, S. Abbas, R. Amin, and S. R. Shah, “Aquatic Pathogens: Transmission, Impacts, and Zoonotic Potential,” in Diseases Across Life: From Humans to Land and Sea, Unique Scientific Publisher, 2023, pp. 150–155. doi: https://doi.org/10.47278/book.HH/2025.133.
[33] U. Amalia, Sumardianto, and T. W. Agustini, “Characterization of Lactic Acid Bacteria (LAB) isolated from Indonesian shrimp paste (terasi),” in IOP Conference Series: Earth and Environmental Science 116, 2018, p. 012049. doi: 10.1088/1755-1315/116/1/012049.
[34] Stefanny and F. H. Pamungkaningtyas, “Shrimp paste: different processing and microbial composition across Southeast Asia,” in IOP Conference Series: Earth and Environmental Science 1169, 2023, p. 012089. doi: 10.1088/1755-1315/1169/1/012089.
[35] H. Helmi et al., “Dynamic Changes in the Bacterial Community and Metabolic Profile during Fermentation of Low-Salt Shrimp Paste (Terasi),” Metabolites, vol. 12, no. 2, p. 118, 2022, doi: https://doi.org/10.3390/metabo12020118.
[36] R. W. Murti, Sumardianto, and L. Purnamayati, “The Effect of Differences of Salt Concentration on Glutamic Acid of Rebon Shrimp (Acetes sp.) Paste,” Indones. J. Aquat. Prod. Technol., vol. 24, no. 1, pp. 50–59, 2021, doi: https://doi.org/10.17844/jphpi.v24i1.33201.
[37] A. A. Prihanto and H. Muyasyaroh, “The Indonesian Fermented Food Product Terasi: History and Potential Bioactivities,” Syst. Rev. Pharm., vol. 12, no. 2, pp. 378–384, 2021, doi: https://dx.doi.org/10.31838/srp.2021.2.52.
[38] I. N. G. Rivera, J. Chun, A. Huq, R. B. Sack, and R. R. Colwell, “Genotypes Associated with Virulence in Environmental Isolates of Vibrio cholerae,” Appl. Environ. Microbiol., vol. 67, no. 6, pp. 2421–2429, 2001, doi: 10.1128/AEM.67.6.2421.
[39] R. F. Wang, W. W. Cao, and C. E. Cerniglia, “A universal protocol for PCR detection of 13 species of foodborne pathogens in foods,” J. Appl. Microbiol., vol. 83, no. 6, pp. 727–736, 1997, doi: https://doi.org/10.1046/j.1365-2672.1997.00300.x.
[40] J. Tao et al., “A multiplex PCR assay with a common primer for the detection of eleven foodborne pathogens,” J. Food Sci., vol. 85, no. 3, pp. 744–754, 2020, doi: 10.1111/1750-3841.15033.
[41] B. Casasola-Rodríguez, G. M. Ruiz-Palacios, R.-C. Pilar, L. Losanoc, M.-R. Ignacio, and M. T. O. de Velásquez, “Detection of VBNC Vibrio cholerae by RT-Real Time PCR based on differential gene expression analysis Beatriz Casasola-Rodríguez,” FEMS Microbiol. Lett., vol. 365, no. 15, p. 3, 2018, doi: 10.1093/femsle/fny156/5046420.
[42] D. R. Greig et al., “A real-time multiplex PCR for the identi fi cation and typing of Vibrio cholerae,” Diagnostic Microbiol. Infect. Dis., vol. 90, no. 3, pp. 171–176, 2018, doi: 10.1016/j.diagmicrobio.2017.11.017.
[43] S. Q. Bonny, M. A. M. Hossain, S. M. K. Uddin, T. Pulingam, S. Sagadevan, and M. R. Johan, “Current trends in polymerase chain reaction based detection of three major human pathogenic vibrios,” Crit. Rev. Food Sci. Nutr., vol. 62, no. 5, pp. 1317–1335, 2020, doi: 10.1080/10408398.2020.1841728.
[44] E. Eschbach et al., “Detection of enteropathogenic Vibrio parahaemolyticus, Vibrio cholerae and Vibrio vulnificus: performance of real-time PCR kits in an interlaboratory study,” Eur. Food Res. Technol., vol. 243, pp. 1335–1342, 2017, doi: 10.1007/s00217-017-2844-z.
[45] J. E. Tarh, “A Review on Diagnostic Methods for the Identification of Vibrio cholerae,” J. Adv. Med. Med. Res., vol. 32, no. 8, pp. 136–164, 2020, doi: 10.9734/JAMMR/2020/v32i830474.
[46] A. Asari et al., Pengantar Statistika. Solok: Mafy Media Literasi Indonesia, 2023.
[47] BSN, Standar Nasional Indonesia 01-2891-1992, Cara Uji Makanan dan Minuman. Jakarta: Badan Standardisasi Nasional, 1992.
[48] L. D. Jayanti and M. Mushlih, “Comparison of the Quality of DNA Template Isolation Results of the Resin Method with and Without Centrifugation,” Indones. J. Innov. Stud., vol. 15, 2021, doi: https://doi.org/10.21070/ijins.v15i.551.
[49] M. Jana, V. Adriana, and K. Eva, “Evaluation of DNA Extraction Methods for Culture-Independent Real-Time PCR-Based Detection of Listeria monocytogenes in Cheese,” Food Anal. Methods, vol. 13, pp. 667–677, 2020, doi: https://doi.org/10.1007/s12161-019-01686-2 Evaluation.
[50] M. D. Ariyana, F. F. Perdhana, and L. Unsunnidhal, “In Silico Design of Multiplex PCR Primers for the Detection of Foodborne Pathogens in Fermented Shrimp Paste (Terasi) from Lombok Island: In Silico PCR and Primer Verification,” West Sci. Nat. Technol., vol. 3, no. 2, pp. 75–88, 2025, doi: https://doi.org/10.58812/wsnt.v3i02.1813.
[51] P. Li, X. Feng, B. Chen, X. Wang, Z. Liang, and L. Wang, “The Detection of Foodborne Pathogenic Bacteria in Seafood Using a Multiplex Polymerase Chain Reaction System,” Foods, vol. 11, no. 23, p. 3909, 2022, doi: https://doi.org/10.3390/foods11233909.
Downloads
Published
Issue
Section
License
Copyright (c) 2026 Firman Perdhana, Muhammad ‘Aidil Febriandito, Mutia Devi Ariyana, Lalu Unsunnidhal, Ines Marisya Dwi Anggraini, Baiq Rien Handayani, Lulu Diani Zuhdia

This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.












